Characterization of the lipoxygenase (LOX) gene family in the Chinese white pear (Pyrus bretschneideri) and comparison with other members of the Rosaceae

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Chervin C, Speirs J, Loveys B, Patterson BD: Influence of low oxygen storage on aroma compounds of whole pears and crushed pear flesh. Postharvest Biol Tec 2000, 19(3):279-285. Publisher Full Text OpenURL Lara I, Miró RM, Fuentes T, Sayez G, Graell J, López ML: Biosynthesis of volatile aroma compounds in pear fruit stored under long-term controlled-atmosphere conditions. Postharvest Biol Tec 2003, 29(1):29-39. Publisher Full Text OpenURL Schwab W, Davidovich-Rikanati R, Lewinsohn E: Biosynthesis of plant-derived flavor compounds. Plant J 2008, 54(4):712-732. PubMed Abstract | Publisher Full Text OpenURL Needleman P, Turk J, Jakschik BA, Morrison AR, Lefkowith JB: Arachidonic acid metabolism. Annu Rev Biochem 1986, 55:69-102. PubMed Abstract | Publisher Full Text OpenURL Bisakowski B, Perraud X, Kermasha S: Characterization of hydroperoxides and carbonyl compounds obtained by lipoxygenase extracts of selected microorganisms. Biosci Biotechnol Biochem 1997, 61(8):1262-1269. PubMed Abstract | Publisher Full Text OpenURL Porta H, Rocha-Sosa M: Lipoxygenase in bacteria: a horizontal transfer event? Microbiology 2001, 147(12):3199-3200. PubMed Abstract | Publisher Full Text OpenURL Vick BA, Zimmerman DC: The biosynthesis of jasmonic acid: a physiological role for plant lipoxygenase. Biochem Bioph Res Co 1983, 111(2):470-477. Publisher Full Text OpenURL Gardner HW: Recent investigations into the lipoxygenase pathway of plants. Biochim Biophys Acta 1991, 1084(3):221-239. PubMed Abstract | Publisher Full Text OpenURL Siedow JN: Plant lipoxygenase: structure and function. Annu Rev Plant Phys 1991, 42(1):145-188. Publisher Full Text OpenURL Kuhn H, Thiele BJ: The diversity of the lipoxygenase family: many sequence data but little information on biological significance. FEBS Lett 1999, 449(1):7-11. PubMed Abstract | Publisher Full Text OpenURL Grechkin A: Recent developments in biochemistry of the plant lipoxygenase pathway. Prog Lipid Res 1998, 37(5):317-352. PubMed Abstract | Publisher Full Text OpenURL Kuhn H, Wiesner R, Rathmann J, Schewe T: Formation of ketodienoic fatty acids by the pure pea lipoxygenase-1. Eicosanoids 1991, 4(1):9-14. PubMed Abstract OpenURL Shimizu T, Radmark O, Samuelsson B: Enzyme with dual lipoxygenase activities catalyzes leukotriene A4 synthesis from arachidonic acid. Proc Natl Acad Sci U S A 1984, 81(3):689-693. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL Feussner I, Wasternack C: The lipoxygenase pathway. Annu Rev Plant Biol 2002, 53(1):275-297. PubMed Abstract | Publisher Full Text OpenURL Bannenberg G, Martinez M, Hamberg M, Castresana C: Diversity of the enzymatic activity in the lipoxygenase gene family of Arabidopsis thaliana. Lipids 2009, 44(2):85-95. PubMed Abstract | Publisher Full Text OpenURL Yang XY, Jiang WJ, Yu HJ: The expression profiling of the lipoxygenase (LOX) family genes during fruit development, abiotic stress and hormonal treatments in cucumber (Cucumis sativus L.). Int J Mol Sci 2012, 13(2):2481-2500. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL Podolyan A, White J, Jordan B, Winefield C: Identification of the lipoxygenase gene family from Vitis vinifera and biochemical characterisation of two 13-lipoxygenases expressed in grape berries of Sauvignon Blanc. Funct Plant Biol 2010, 37(8):767-784. Publisher Full Text OpenURL Shin JH, Van K, Kim DH, Kim KD, Jang YE, Choi B-S, Kim MY, Lee S-H: The lipoxygenase gene family: a genomic fossil of shared polyploidy between Glycine max and Medicago truncatula. BMC Plant Biol 2008, 8(1):133. PubMed Abstract | BioMed Central Full Text | PubMed Central Full Text OpenURL Shin JH, Van K, Kim KD, Lee YH, Jun TH, Lee SH: Molecular sequence variations of the lipoxygenase-2 gene in soybean. Theor Appl Genet 2012, 124(4):613-622. PubMed Abstract | Publisher Full Text OpenURL Vogt J, Schiller D, Ulrich D, Schwab W, Dunemann F: Identification of lipoxygenase (LOX) genes putatively involved in fruit flavour formation in apple (Malus × domestica). Tree Genet Genom 2013, 9(6):1493-1511. Publisher Full Text OpenURL Verde I, Abbott AG, Scalabrin S, Jung S, Shu S, Marroni F, Zhebentyayeva T, Dettori MT, Grimwood J, Cattonaro F, Zuccolo A, Rossini L, Jenkins J, Vendramin E, Meisel LA, Decroocq V, Sosinski B, Prochnik S, Mitros T, Policriti A, Cipriani G, Dondini L, Ficklin S, Goodstein DM, Xuan P, Fabbro CD, Aramini V, Copetti D, Gonzalez S, Horner DS, et al.: The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution. Nat Genet 2013, 45(5):487-494. PubMed Abstract | Publisher Full Text OpenURL Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, et al.: The genome of the domesticated apple (Malus × domestica Borkh.). Nat Genet 2010, 42(10):833-839. PubMed Abstract | Publisher Full Text OpenURL Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton JM, Rees DJ, Williams KP, Holt SH, Ruiz Rojas JJ, Chatterjee M, et al.: The genome of woodland strawberry (Fragaria vesca). Nat Genet 2011, 43(2):109-116. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL Zhang Q, Chen W, Sun L, Zhao F, Huang B, Yang W, Tao Y, Wang J, Yuan Z, Fan G, Xing Z, Han C, Pan H, Zhong X, Shi W, Liang X, Du D, Sun F, Xu Z, Hao R, Lv T, Lv Y, Zheng Z, Sun M, Luo L, Cai M, Gao Y, Wang J, Yin Y, Xu X, et al.: The genome of Prunus mume. Nat Commun 2012, 3:1318. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL Wu J, Wang Z, Shi Z, Zhang S, Ming R, Zhu S, Khan MA, Tao S, Korban SS, Wang H, Chen NJ, Nishio T, Xu X, Cong L, Qi K, Huang X, Wang Y, Zhao X, Wu J, Deng C, Gou C, Zhou W, Yin H, Qin G, Sha Y, Tao Y, Chen H, Yang Y, Song Y, Zhan D, et al.: The genome of the pear (Pyrus bretschneideri Rehd.). Genome Res 2013, 23(2):396-408. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL Schaffer RJ, Friel EN, Souleyre EJ, Bolitho K, Thodey K, Ledger S, Bowen JH, Ma JH, Nain B, Cohen D, Gleave AP, Crowhurst RN, Janssen BJ, Yao JL, Newcomb RD: A genomics approach reveals that aroma production in apple is controlled by ethylene predominantly at the final step in each biosynthetic pathway. Plant Physiol 2007, 144(4):1899-1912. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL Eddy SR: Accelerated profile HMM searches. PLoS Comput Biol 2011, 7(10):e1002195. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S: MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011, 28(10):2731-2739. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL Wang Y, You FM, Lazo GR, Luo MC, Thilmony R, Gordon S, Kianian SF, Gu YQ: PIECE: a database for plant gene structure comparison and evolution. Nucleic Acids Res 2013, 41(D1):D1159-D1166. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL Tang H, Bowers JE, Wang X, Ming R, Alam M, Paterson AH: Synteny and collinearity in plant genomes. Science 2008, 320(5875):486-488. PubMed Abstract | Publisher Full Text OpenURL