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Johnson, D., Meade, A. 
ORCID: https://orcid.org/0000-0001-7095-7711 and Alexandrov, V. N.
(2009)
A lightweight supercomputing web portal for inferring phylogenetic trees.
In: 5th IEEE International Conference on e-Science Workshops, 2009, Oxford, UK.
Abstract/Summary
In this paper we describe a lightweight Web portal developed for running computational jobs on a IBM JS21 Bladecenter cluster, ThamesBlue, for inferring and analyzing evolutionary histories. We first discuss the need for leveraging HPC as a enabler for molecular phylogenetics research. We go on to describe how the portal is designed to interface with existing open-source software that is typical of a HPC resource configuration, and how by design this portal is generic enough to be portable to other similarly configured compute clusters, and for other applications.
| Item Type | Conference or Workshop Item (Paper) |
| URI | https://reading-clone.eprints-hosting.org/id/eprint/9628 |
| Item Type | Conference or Workshop Item |
| Refereed | Yes |
| Divisions | Science Life Sciences > School of Biological Sciences |
| Uncontrolled Keywords | biology computing, genetics, mainframes, pattern clustering, portals, public domain software , HPC resource configuration, IBM JS21 Bladecenter cluster, ThamesBlue, lightweight supercomputing Web portal, molecular phylogenetics research, open-source software, phylogenetic trees |
| Publisher | IEEE |
| Download/View statistics | View download statistics for this item |
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